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When to Call the Accountant: Signs You Need Tax Help

You should call an accountant as soon as your Australian tax situation involves complexity, uncertainty, higher-than-normal ATO scrutiny risk, or material mo...

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09/12/202519 min read

When to Call the Accountant: Signs You Need Tax Help

Professional Accounting Practice Analysis
Topic: When to call the accountant: signs you need professional tax help

Last reviewed: 17/12/2025

Focus: Accounting Practice Analysis

When to Call the Accountant: Signs You Need Tax Help

You should call an accountant as soon as your Australian tax situation involves complexity, uncertainty, higher-than-normal ATO scrutiny risk, or material money at stake—particularly where GST/BAS, capital gains tax (CGT), business structuring, Division 7A, payroll/PAYG, trust distributions, or record-keeping gaps are present. In practice, the “right time” is usually before lodging (or before a major transaction), because prevention is cheaper than amendment, audit defence, penalties, or interest.

What does “needing an accountant” actually mean in Australia?

Needing an accountant means your tax outcome depends on applying Australian tax law correctly, substantiating your position, and managing ATO compliance obligations—often across multiple taxes and reporting regimes.

From an Australian accounting practice perspective, the key issue is not simply “can you lodge?” but whether you can lodge correctly, with defensible documentation, while minimising compliance risk under ATO audit and review programs.

  • Governing framework: Income Tax Assessment Act 1997, Income Tax Assessment Act 1936, Taxation Administration Act 1953, GST law (A New Tax System (Goods and Services Tax) Act 1999), and ATO rulings/guidance.
  • Why it matters: ATO compliance activity increasingly targets substantiation, GST governance, deduction integrity, and data-matching (banking, property, payroll, crypto exchange reporting, and third-party reports).

When should you call the accountant before lodging (not after)?

You should call before lodging when decisions you make now will determine your legal position, substantiation, and ability to claim deductions later.

  • You are about to sell an investment property and are unsure about main residence exemption, cost base, or whether improvements are capital vs repairs (CGT consequences).
  • You are starting a side business and don’t know whether you are a hobby vs business, or whether you should register for GST.
  • You are paying yourself from a company and are unsure whether it’s wages, dividends, or a Division 7A loan (high penalty risk if mishandled).

ATO context: the ATO expects contemporaneous records and correct characterisation of transactions. Where characterisation is wrong, the ATO can amend assessments and apply penalties and interest under the Taxation Administration Act 1953.

What are the clearest warning signs you need professional tax help?

You should engage an accountant when one or more of the following “risk and complexity” triggers apply.

Are you running a business, even a small one?

If you operate a business (sole trader, company, partnership, trust), professional tax help is usually warranted because you are managing multiple tax systems and legal obligations.

  • GST registration and BAS lodgment: errors around GST-free vs taxable supplies, input tax credits, and tax invoice rules.
  • PAYG instalments and withholding: particularly if you hire staff or contractors.
  • Deductions vs capital costs: distinguishing repairs from improvements, or operating expenses from depreciating assets.
  • Trading stock, work in progress, and prepayments: timing rules can materially change taxable income.

ATO guidance commonly emphasises accurate reporting and record-keeping for businesses (including GST and PAYG). Where you are uncertain about classification or timing, the accountant’s role is to apply the law and ATO interpretative guidance consistently.

Have you received an ATO letter, review notice, or audit request?

If the ATO contacts you, you should obtain professional assistance promptly. Delays can limit your options and increase exposure.

  • Data-matching discrepancy notices (income omission, CGT mismatches, contractor reporting, or GST anomalies)
  • “Review” letters requesting substantiation (work-related expenses, rental property deductions, motor vehicle claims)
  • BAS or PAYG compliance activity
  • Audit commencement letters
  • A sole trader receives an ATO letter questioning “other business income” vs bank deposits. An accountant will reconcile bank transactions to invoices, identify private vs business receipts, and prepare a structured response with supporting evidence.

Are your records incomplete, disorganised, or mostly in bank statements?

If you are relying on bank statements alone, you are usually exposed. Bank statements show cash movement, not tax character (GST treatment, deductibility, private use, timing, and substantiation).

  • Missing invoices/receipts
  • No logbooks or travel diaries where required
  • Unreconciled bank accounts (business and private mixed)
  • No asset register for depreciation
  • Inconsistent GST coding

ATO substantiation expectations: The ATO’s guidance on deductions and record-keeping requires that claims be supported by evidence and that records be kept for the required retention period (commonly five years, with longer practical retention where CGT assets are involved because cost base records must support later CGT events).

Are you claiming “high-risk” deductions?

If your deductions are unusually high relative to income, or involve categories frequently reviewed by the ATO, professional review is advisable.

  • Motor vehicle claims: logbook method vs cents per kilometre and apportionment
  • Working from home: correct method and evidence requirements
  • Self-education expenses: nexus to current income-earning activities
  • Rental property deductions: interest apportionment, repairs vs capital works, private use, initial repairs
  • Contractor vs employee: risk of failing PAYG withholding and superannuation obligations

Professional value: an accountant will test the legal basis (“nexus” to assessable income), ensure apportionment is reasonable, and confirm evidence meets ATO requirements.

Do you have capital gains tax (CGT) events or asset sales?

If you sold, gifted, transferred, or otherwise disposed of assets, you likely have CGT consequences that require correct cost base, dates, and exemptions.

  • Property sales (including partial main residence use, absent from home rules, or subdividing)
  • Share disposals (including corporate actions)
  • Crypto disposals and swaps
  • Business asset sales (small business CGT concessions may apply but are technical)

Legislative basis: CGT is primarily in Parts 3-1 and 3-3 of the Income Tax Assessment Act 1997, and outcomes often hinge on facts, dates, and documentation.

  • A taxpayer sells a property that was a main residence for some years, then rented out. The main residence exemption can be seen as “simple” until you calculate periods, absence rules, third element costs, and capital works. Small documentation gaps can materially change the taxable gain.

Are you using (or should you be using) a company, trust, or partnership?

If you operate through a trust or company, you should get professional tax help because distribution rules, Division 7A, and reporting are complex and heavily scrutinised.

  • Trust distributions: resolutions, present entitlement, streaming, and beneficiary tax outcomes
  • Division 7A (private company loans): payments/loans to shareholders or associates can be treated as unfranked dividends if not managed correctly (Income Tax Assessment Act 1936, Division 7A)
  • Bucket company arrangements and UPE management: frequently reviewed where documentation and loan arrangements are weak

ATO guidance: the ATO has extensive materials on Division 7A and trust compliance, and has historically focused on documentation quality and integrity of arrangements. If you cannot clearly evidence resolutions and loan terms, you are exposed.

Are you involved in cross-border income, residency, or foreign assets?

If you have foreign income, overseas employment, dual residency indicators, or foreign assets, professional tax help is strongly recommended.

  • Australian tax residency uncertainty (domicile/permanent place of abode issues)
  • Foreign income and foreign tax offsets
  • Controlled foreign company considerations for more complex cases
  • International superannuation or foreign pensions

Residency is a factual and legal question and often requires structured analysis against legislation and ATO guidance, with significant financial consequences.

Did your circumstances change significantly this year?

Major life and financial changes often create tax complexity that is not obvious until later.

  • Starting or selling a business
  • Separation/divorce and asset transfers
  • Inheritance with investment assets (cost base records become critical)
  • Large redundancy, termination payments, or share schemes
  • Turning a side hustle into a business
  • Buying a new home and renting out the old one (CGT, deductions, record-keeping)

Is DIY tax software enough, and when is it not?

DIY tax tools are adequate only when your affairs are simple, your substantiation is strong, and there are no structural or transactional issues.

  • It captures numbers but does not validate legal characterisation (e.g., repairs vs capital, private vs business apportionment).
  • It does not design defensible positions for ATO review (document trail, reconciliations, and governance).
  • It does not identify downstream consequences (CGT record retention, Division 7A, trust minutes, GST adjustments).
  • If you cannot explain the “why” of your claim and produce evidence quickly, you are not audit-ready.

How do you decide quickly: should you call now?

  • You are unsure about GST, BAS, PAYG, or super obligations.
  • You have any CGT event (property, shares, crypto) and don’t have a complete cost base file.
  • You operate through a company or trust and have paid yourself or family members in any way.
  • You have received any ATO contact letter or portal message.
  • Your bookkeeping is not reconciled, or you are mixing private and business transactions.
  • Your deductions are significantly higher than prior years without clear evidence.

What will a good accountant do first (and what should you prepare)?

A competent Australian tax accountant will triage risk, clean up records, confirm tax positions against ATO guidance and legislation, and then lodge with a defensible workpaper file.

  1. ATO Notice of Assessment (prior year) and last lodged return.
  2. Income statements (PAYG), bank interest summaries, dividend statements, and managed fund tax statements.
  3. If business: bank statements, invoices, expense receipts, payroll reports, super payments, and BAS history.
  4. If property: settlement statements, loan statements, agent statements, depreciation schedule, and improvement invoices.
  5. If crypto: exchange reports and wallets used.
  6. If trust/company: financials, loan accounts, minutes/resolutions, and details of drawings.

How can automation reduce the “call the accountant” pain (and cost)?

You can reduce the need for last-minute clean-ups by automating reconciliation, documentation capture, and working papers—so when you do need an accountant, the file is already audit-ready.

From an Australian practice workflow perspective, the biggest cost driver is not tax advice; it is reconstructing records and reconciling transactions to evidence.

  • Automated bank reconciliation: moves reconciliation from hours to minutes when done correctly and consistently.
  • AI-powered reconciliation and categorisation: reduces errors and creates consistent coding for GST/BAS and ITR labels.
  • Automated working papers: reduces manual spreadsheets and strengthens file defensibility.

How does MyLedger compare to Xero, MYOB, and QuickBooks for getting “tax-ready”?

MyLedger is designed for Australian accounting practices and focuses on automation, reconciliation speed, and ATO-linked compliance workflows—areas where general small business platforms (Xero, MYOB, QuickBooks) often require more manual effort.

  • Reconciliation speed: MyLedger = 10–15 minutes per client, Xero/MYOB/QuickBooks = commonly 3–4 hours when accounts are messy or high-volume (around 90% faster; ~85% time reduction).
  • Automation level (coding): MyLedger = AI auto-categorises around 90% immediately based on learned patterns and mapping rules, Xero/MYOB/QuickBooks = rules exist but often require more manual review and exception handling.
  • Working papers: MyLedger = automated working papers including BAS reconciliation and Division 7A schedules, Xero/MYOB/QuickBooks = typically reliant on manual Excel working papers or separate specialist tools.
  • ATO integration accounting software depth: MyLedger = direct ATO portal integration (client details, lodgement history, due dates, ATO statement/transactions import), Xero/MYOB/QuickBooks = generally more limited ATO-facing functionality depending on configuration and connected apps.
  • Pricing model (practice economics): MyLedger = planned $99–199/month for unlimited clients (currently free during beta), Xero/MYOB/QuickBooks = typically per-entity/per-file pricing, which commonly scales to $50–70 per client/month in practice.
  • Faster monthly close and BAS readiness.
  • Less time reconstructing records when clients call late.
  • More consistent GST and chart-of-accounts mapping for ITR preparation.

What are real-world scenarios where calling an accountant early saves money?

You save money by calling early because it prevents amendments, penalties, and time-consuming reconstruction.

  • Division 7A risk (company): A director treats company funds as personal. Early advice structures repayments/loan agreements and prevents deemed dividend outcomes under Division 7A.
  • Property sale with missing cost base: Early advice prompts gathering settlement/renovation records and applying correct main residence rules, reducing taxable gain errors.
  • GST errors in BAS: Early review catches GST-free vs taxable misclassifications and timing errors before lodgment, reducing revision cycles and ATO scrutiny.
  • Contractor vs employee misclassification: Early review reduces exposure to PAYG withholding and super guarantee issues.

Next Steps: How Fedix can help you get tax-ready faster

If your main issue is messy records, slow month-end, or BAS/ITR preparation drag, Fedix’s MyLedger is built to make Australian compliance work faster and more defensible.

  1. Standardise your data capture (bank feeds or statement imports) and reconcile monthly, not annually.
  2. Use automated bank reconciliation and mapping rules to keep coding consistent for GST and ITR labels.
  3. If you run a company or trust, maintain working papers (including Division 7A) throughout the year, not at year-end.
  4. Learn more about Fedix and MyLedger (including AutoRecon, automated working papers, and ATO integration) at home.fedix.ai and consider a pilot workflow for your practice.
  • MyLedger vs Xero for automated bank reconciliation in Australia
  • How to automate bank reconciliation for BAS and year-end
  • Division 7A automation and MYR scheduling for private companies

Frequently Asked Questions

Q: When should I see an accountant for my tax return in Australia?

You should see an accountant when you have business income, CGT events, a trust or company structure, foreign income/residency issues, or you cannot substantiate deductions with clear records. You should also engage immediately if the ATO contacts you about a review or discrepancy.

Q: Is it worth paying an accountant if my tax is “simple”?

It can be, but the strongest value appears when there is risk or complexity. If you have only salary and wages with straightforward deductions and strong substantiation, DIY may be sufficient; however, a one-off review can still prevent errors that lead to amendments and ATO follow-up.

Q: What are the biggest ATO red flags that mean I need help?

Common red flags include unusually high deductions relative to income, inconsistent GST reporting, unreconciled business bank accounts, missing substantiation, and any ATO discrepancy notice or review letter. Property, crypto, and private company dealings (Division 7A) also warrant early professional review.

Q: Can an accountant help if I’ve already lodged and made a mistake?

Yes. An accountant can quantify the impact, prepare an amendment where appropriate, and help respond to ATO queries. The optimal approach is to act quickly because interest and penalties may accrue and evidence is easier to retrieve earlier.

Q: How do I reduce accounting fees without increasing ATO risk?

You reduce fees by keeping clean, reconciled records and maintaining supporting documents throughout the year. Using AI-powered reconciliation and automated working papers (for example, in MyLedger) reduces time spent on reconstruction and increases the quality of the substantiation file.

Disclaimer: This information is general in nature and is not financial or legal advice. Tax laws and ATO guidance change over time and outcomes depend on your facts. Professional advice should be obtained for your specific circumstances.